Refereed Publications

Varkey, D., McAllister, M.K., Askey, P., Parkinson, E., Clarke, A., Godin. T., 2016. Multi-criteria decision analytic approach using Bayesian decision network (Stock-optim) for recreational trout fisheries in British Columbia, Canada. North American Journal of Fisheries Management . Accepted August 2016.

Kurota, H., McAllister, M.K., Parkinson, E.A., Johnston, N. T. 2016. Evaluating the influence of predator-prey interactions on stock assessment and management reference points for a large lake ecosystem. Canadian Journal of Fisheries and Aquatic Sciences 73: 1373-1388.

Bertram, D.F., Drever, M.C., McAllister, M.K., Schroeder, B.K., Lindsay, D., & Faust, D. 2015. Estimation of Coast-wide Population Trends of Marbled Murrelets in Canada Using a Bayesian Hierarchical Model. PLOS One. 10(8) 13 p.

Carruthers, T.,R., Punt, A.E., Walters, C.J., MacCall, A., McAllister, M.K., Dick, E.J., Cope, J., 2015. Evaluating methods for setting catch limits in data-limited fisheries. Fisheries Research. 153: 148-168.

Carruthers, T.R., Walter, J.F., McAllister, M.K., and Bryan, M.D., 2015. Modelling age-dependent movement: an application to red and gag grouper in the Gulf of Mexico. Canadian Journal of Fisheries and Aquatic Sciences. 72(8) 1159-1156.

Carruthers, T.R, Punt, A.E., Walters, C.J., MacCall, A., McAllister, M.K., Dick, E.J., Cope, J., 2014. Evaluating methods for setting catch limits in data-limited fisheries. Fisheries Research. 153: 148-168.

Okamura, H., McAllister, M.K., Ichinokawa, M., Yamanaka, L., and Holt, K. 2014. Evaluation of the sensitivity of biological reference points to the spatio-temporal distribution of fishing effort when seasonal migrations are sex-specific. Fisheries Research. 158: 116-123.

Varkey, D., Pitcher, T., McAllister, M.K., Sumaila, R. 2013. Bayesian decision-network modeling of multiple stakeholders for reef ecosystem restoration in the Coral Triangle.   Conservation Biology. 27(3): 459-469.

Forrest, R., McAllister, M.K., Martell, S., Walters, C.J. 2013. Modelling the effects of density-dependent mortality in juvenile red snapper caught as bycatch in Gulf of Mexico shrimp fisheries: implications for management. Fisheries Research. 146: 102-120.

Cullis-Suzuki, S., McAllister, M.K., Carruthers, T., Baker, P., Tate, T.J. 2012. Red snapper discards in the Gulf of Mexico: fishermen’s perceptions following the implementation of Individual Fishing Quotas. Marine Policy. 36: 583-591.

Carruthers, T.R., Walters, C.J., McAllister, M.K., 2012. Evaluating methods that classify fisheries stock status using only fisheries catch data. Fisheries Research. 119-120: 66-79.

Whitlock, R.E. and McAllister, M.K. 2012. Incorporating spatial and seasonal dimensions in a stock reduction analysis for lower Fraser River white sturgeon (Acipenser transmontanus). Can. J. Fish Aquat. Sci. 69: 1674–1697.

Ward, H. Askey, P. Post, J., Varkey, D. McAllister, M.K. 2012. Basin characteristics and temperature improve abundance estimates from standard index netting of small lakes. Fisheries Research. 131– 133: 52– 59.

Whitlock, R.E., McAllister, M.K and Block, B.A. 2012 Estimating fishing and natural mortality rates for Pacific bluefin tuna (Thunnus orientalis) using electronic tagging data. Fisheries Research. 119-120: 115-127.

Whitlock, R.E., McAllister, M.K and Block, B.A. 2012 Estimating fishing and natural mortality rates for Pacific bluefin tuna (Thunnus orientalis) using electronic tagging data. Fisheries Research. 119-120: 115-127.

Carruthers, T. R., M. K. McAllister, and R. N. M. Ahrens. 2011. Integrating imputation and standardization of catch rate data in the calculation of relative abundance indices. Fisheries Research. 109: 157-167.

Carruthers, T.R., M.K. McAllister, and Taylor, N. G. 2011. Spatial surplus production modeling of Atlantic tunas and billfish. Ecological Applications. 21: 2734-2755.

Taylor, N.G., McAllister, M.K., Lawson, G. L. Carruthers, T. and Block, B. A. 2011. Atlantic bluefin tuna: a novel multistock spatial model for assessment population biomass. PLOS ONE. 6(12): 1-10.

Carruthers, T. R., M. K. McAllister and R. N. M. Ahrens. 2010. Simulating spatial dynamics to evaluate methods of deriving abundance indices for tropical tunas. Can. J. Fish. Aquat. Sci. 67: 1409-1427.

Carruthers, T. R., and M. K. McAllister. 2010. Quantifying tag reporting rates for Atlantic tuna fleets using coincidental tag recaptures. Aquatic Living Resources 23: 343-352.

Forrest, R. E., McAllister, M.K., Dorn, M., Martell, S., and Stanley, R., D., 2010. Hierarchical Bayesian estimation of recruitment parameters and reference points for Pacific rockfishes (Sebastes spp.) under alternative assumptions about the stock-recruit function. Can. J. Fish. Aquat. Sci. 67: 1611-1634.

McAllister, M.K., Stanley, R., Starr, P. 2010. Using experiments and expert judgment to model trawl survey catchability for Pacific rockfishes: application to B.C. bocaccio (Sebastes paucispinis). U.S. Fishery Bulletin 108: 282-304.

Robert, M., Faraj, A., McAllister, M. K., and Rivot, E. 2010. Bayesian state–space modelling of the De Lury depletion model: strengths and limitations of the method, and application to the Moroccan octopus fishery. ICES Journal of Marine Science, 67(6): 1272-1290.